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PDFEdit is the PDF editor that I have been looking for. It supports drawing and annotating PDF documents. It isn't included in the Ubuntu repositories yet, but there is a Debian/Ubuntu package.
Installation. Get the latest version of the software from here. The filename begins with pdfedit. Then install it with dpkg:
dpkg -i pdfedit_0.3.1-1~3v1ubuntu0_i386.deb
Use. Launch; load a PDF file; annotate.